YRuSi and LaRuSi host the highest charge density wave (CDW) transition temperatures ever reported in kagome metals, and 400~K, with propagation vectors and , respectively. The microscopic mechanism behind these record values has remained unresolved. Here, we combine anharmonic phonon renormalization extracted from molecular dynamics driven by a machine-learned force field with mode-resolved electron-phonon coupling (EPC) analysis to identify this mechanism. The CDW is driven by mode-selective EPC: the Ru out-of-plane phonon modes couple the Ru- and Si- orbitals, and the phonon linewidth peaks sharply at , while the featureless electronic susceptibility rules out Fermi-surface nesting. Phonon anharmonicity melts the CDW, and the anharmonic phonon spectra reproduce both and in good agreement with experiments. Molecular dynamics simulations also visualize the CDW melting in real space. Chemical bonding analysis further shows that the smaller Y radius strengthens the Ru-Ru bonds, enhancing lattice rigidity and accounting for the factor-of-two higher of YRuSi. Our results establish a unified microscopic picture of CDW formation and melting in kagome metals YRuSi and LaRuSi.

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