Fidelity estimation is a fundamental tool for assessing quantum resource states across quantum information science. For small infidelity , tomography and direct fidelity estimation (DFE) have worst-case sample complexity at fixed relative accuracy and confidence. Direct target projections achieve but generally require non-Clifford operations whose reliability depends on the resource states that are typically the target of benchmarking. Here, we introduce the Bell–coherence fidelity estimation (BCFE) with optimal sample complexity using only Clifford gates and Pauli measurements. We prove that BCFE is applicable to arbitrary pure targets, possibly multi-qubit, with the statistical error of the single-copy coherence part explicitly controlled. To evaluate BCFE in a practical setting, we apply BCFE to analog rotation resource states in the candidate early-FTQC architecture called the Space-Time Efficient Analog Rotations (STAR) architecture. In the simulations using surface codes, BCFE is estimated to require up to approximately times fewer resource states than DFE for the same standard error in the infidelity estimate, while its estimates remain close to reference values despite circuit-level noise in the additional Bell measurement operations. These results support efficient resource benchmarking within fault-tolerant quantum computing.

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