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Characterizing the phonon distribution of trapped-ion motional states is essential for many applications in quantum information processing, but existing methods become ill-conditioned beyond the Lamb-Dicke regime. We overcome this limitation by recasting phonon-state reconstruction as a filter-function inversion problem. Using composite pulses on the carrier and multiple sidebands, we engineer well-conditioned filters in phonon space to characterize pure and mixed states, study heating dynamics, and reconstruct Fock states up to .

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