Diagnosing and Restoring the Degraded Fault Distance of Magic State Cultivation

T-state cultivation is a resource-efficient protocol producing logical T states but recent benchmarks show that its logical error rate is considerably higher than intended i.e. than S-state cultivation, which is the analogous protocol for producing logical S states. In this paper, we explain this T-S discrepancy by analytically showing, under circuit-level depolarising noise, that distance-3 (-5) T-state cultivation has fault distance 2 (3) due to Pauli hook errors that propagate to coherent Clifford errors after its final double-check circuit; such errors remain Pauli in S-state cultivation, which consequently retains fault distance 3 (5). As part of our analysis we derive a general formula, and an $\mathcal{O}(n^3)$-time algorithm for fixed logical-qubit count, for the acceptance probability of a logical mixed state afflicted with a Clifford error, where $n$ is the physical qubit count. We then design flags that detect the malignant hook errors in cultivation, improving the pre-escape logical error rate from $\mathcal{O}(p^3)$ to $\mathcal{O}(p^5)$. At noise level $p={10}^{-3}$, this is a 4.9$\times$ improvement, costing a 1.36$\times$ increase in attempts per accepted shot.