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In the paper, we represent a comparison analysis of the methods of the topological alignment and extract the main mathematical principles forming the base of the concept. The main narrative is devoted to the so-called coupled methods dealing with the data sets of various nature. As a main theoretical result, we obtain harmonious generalizations of the graph Laplacian and kernel based methods with the central idea to find a natural structure coupling data sets of various nature. Finally, we discuss prospective applications and consider far reaching generalizations related to the hypercomplex numbers and Clifford algebras.

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